The dataset viewer is not available for this split.
Error code: FeaturesError
Exception: ArrowInvalid
Message: JSON parse error: Column(/ner/[]/[]/[]) changed from number to string in row 0
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 145, in _generate_tables
dataset = json.load(f)
File "/usr/local/lib/python3.9/json/__init__.py", line 293, in load
return loads(fp.read(),
File "/usr/local/lib/python3.9/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
File "/usr/local/lib/python3.9/json/decoder.py", line 340, in decode
raise JSONDecodeError("Extra data", s, end)
json.decoder.JSONDecodeError: Extra data: line 2 column 1 (char 3086)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 240, in compute_first_rows_from_streaming_response
iterable_dataset = iterable_dataset._resolve_features()
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2216, in _resolve_features
features = _infer_features_from_batch(self.with_format(None)._head())
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1239, in _head
return _examples_to_batch(list(self.take(n)))
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1389, in __iter__
for key, example in ex_iterable:
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1044, in __iter__
yield from islice(self.ex_iterable, self.n)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 282, in __iter__
for key, pa_table in self.generate_tables_fn(**self.kwargs):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 148, in _generate_tables
raise e
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 122, in _generate_tables
pa_table = paj.read_json(
File "pyarrow/_json.pyx", line 308, in pyarrow._json.read_json
File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: JSON parse error: Column(/ner/[]/[]/[]) changed from number to string in row 0Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
PICKLE
PICKLE is the dataset associated with the manuscript In a PICKLE: A gold standard entity and relation corpus for the molecular plant sciences. The code repository associated with this dataset can be found here.
Format specification
This dataset is formatted according to the specifications for use with the DyGIE++ architecture.
NOTE: At this time, the dataset will throw a JSONDecodeError when used with load_datasets (see #6460 on datasets). In the meantime, you can access the data by downloading the .jsonl files directly from the GUI, and importing to Python with the following code:
import jsonlines
with jsonlines.open('train.jsonl') as reader:
train = []
for obj in reader:
train.append(obj)
Dataset details
There are a total of 250 documents in all.jsonl, split up into 68%/12%/20% train/dev/test. Each document is an abstract from a scientific paper in the search results for the terms "gibberellic acid" and "jasmonic acid". There are 6,245 entity and 2,149 relation annotations across the 250 documents.
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