Christina Theodoris

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New activity in ctheodoris/Geneformer about 8 hours ago

Splitting dataset

6

#487 opened 4 days ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer about 15 hours ago

30m Model Only Output 18360 Gene Embeddings Instead of 25424

1

#489 opened about 19 hours ago by

parkjosh523

New activity in ctheodoris/Geneformer 1 day ago

Inquiry About PEFT Compatibility Issue

3

#466 opened about 1 month ago by

zzzk123

New activity in ctheodoris/Geneformer 2 days ago

Getting an error while using extract_embs to extract geneformer embeddings

6

#488 opened 3 days ago by

GalenP

New activity in ctheodoris/Geneformer 3 days ago

Replicating results for Figure 6

14

#246 opened over 1 year ago by

MinieRosie

New activity in ctheodoris/Geneformer 5 days ago

median computation : gene_median_dictionary_gc95M

3

#486 opened 8 days ago by

shakeel604

New activity in ctheodoris/Geneformer 8 days ago

Different N_Detections for OE or deletion of same gene with same dataset

2

#485 opened 8 days ago by

ag2022

New activity in ctheodoris/Geneformer 9 days ago

Getting an runtime error when trying to predict of mismached shapes

1

#484 opened 9 days ago by

GalenP

Prepare data cell level pass cell state dict instead of genes

#483 opened 9 days ago by

hchen725

New activity in ctheodoris/Geneformer 10 days ago

gene_class_dict "NoneType object has no attribute 'items'"

2

#482 opened 10 days ago by

ag2022

updated a model 10 days ago

ctheodoris/Geneformer

Fill-Mask • Updated 9 days ago • 1.27k • 216

New activity in ctheodoris/Geneformer 10 days ago

Is the order of word embeddings in a pretrained model the same as the order of token in the dictionary?

3

#481 opened 10 days ago by

myl200

[Rank value encoding] What kinds of normalization was done before calculating the non-zero median for genes?

1

#480 opened 10 days ago by

myl200

get_embs() method expects token names to be in token_gene_dict.values(), but are stored as keys

1

#479 opened 12 days ago by

jo-mengr

New activity in ctheodoris/Geneformer 12 days ago

Cell SubTypes 47/ 53 classes : How?

5

#478 opened 15 days ago by

shakeel604

New activity in ctheodoris/Geneformer 14 days ago

Installation error

2

#474 opened 19 days ago by

shakeel604

NameError: name 'LRScheduler' is not defined"

2

#467 opened about 1 month ago by

zh-zhang1984

Clarification on `gene_class_dict` Format

1

#469 opened about 1 month ago by

lishensuo

New activity in ctheodoris/Genecorpus-30M 16 days ago

Wanted to know more information about the ranked sequence of input ids

1

#25 opened 17 days ago by

GalenP

New activity in ctheodoris/Geneformer 16 days ago

AssertionError of extracts embedding from input data

9

#435 opened 4 months ago by

yuexiafx