reset output for example
Browse files
app.py
CHANGED
@@ -211,6 +211,10 @@ if __name__ == "__main__":
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'''
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)
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# Define Gradio inputs and outputs
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file_input = gr.File(label="Upload a .h5ad single cell gene expression file or select a default dataset below")
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# species_input = gr.Dropdown(choices=["human", "mouse"], label="Select species")
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@@ -232,6 +236,10 @@ if __name__ == "__main__":
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image_output = gr.Image(type="numpy", label="UMAP of UCE Embeddings")
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file_output = gr.File(label="Download embeddings")
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pred_output = gr.File(label="Download predictions")
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# Add the components and link to the function
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run_button.click(
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@@ -240,13 +248,10 @@ if __name__ == "__main__":
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outputs=[image_output, file_output, pred_output]
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)
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-
default_dataset_1_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="100_pbmcs_proc_subset.h5ad")
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default_dataset_2_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="1k_pbmcs_proc_subset.h5ad")
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-
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examples = gr.Examples(
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examples=[[default_dataset_1_path, "human", "PBMC 100 cells"],[default_dataset_2_path, "human", "PBMC 1000 cells"]],
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inputs=[file_input, species_input, default_dataset_input],
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-
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fn=main,
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cache_examples=True
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)
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'''
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)
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# download default datasets and assign paths
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default_dataset_1_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="100_pbmcs_proc_subset.h5ad")
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default_dataset_2_path = hf_hub_download(repo_id="minwoosun/uce-misc", filename="1k_pbmcs_proc_subset.h5ad")
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# Define Gradio inputs and outputs
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file_input = gr.File(label="Upload a .h5ad single cell gene expression file or select a default dataset below")
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# species_input = gr.Dropdown(choices=["human", "mouse"], label="Select species")
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image_output = gr.Image(type="numpy", label="UMAP of UCE Embeddings")
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file_output = gr.File(label="Download embeddings")
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pred_output = gr.File(label="Download predictions")
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print(image_output)
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print(file_output)
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print(pred_output)
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# Add the components and link to the function
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run_button.click(
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outputs=[image_output, file_output, pred_output]
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)
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examples = gr.Examples(
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examples=[[default_dataset_1_path, "human", "PBMC 100 cells"],[default_dataset_2_path, "human", "PBMC 1000 cells"]],
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inputs=[file_input, species_input, default_dataset_input],
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outputs=[image_output, file_output, pred_output],
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fn=main,
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cache_examples=True
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)
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