fix file names for pathogenic datasets
Browse files
genomics-long-range-benchmark.py
CHANGED
@@ -556,9 +556,9 @@ class VariantEffectPathogenicHandler(GenomicLRATaskHandler):
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"""
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self.sequence_length = sequence_length
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-
if task_name == '
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self.data_file_name = "variant_effect_pathogenic/vep_pathogenic_coding.csv"
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-
elif task_name == '
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self.data_file_name = "variant_effect_pathogenic/" \
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"vep_pathogenic_non_coding_subset.csv" \
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if subset else "variant_effect_pathogenic/vep_pathogenic_non_coding.csv"
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"""
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self.sequence_length = sequence_length
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+
if task_name == 'variant_effect_pathogenic_clinvar':
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self.data_file_name = "variant_effect_pathogenic/vep_pathogenic_coding.csv"
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+
elif task_name == 'variant_effect_pathogenic_omim':
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self.data_file_name = "variant_effect_pathogenic/" \
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"vep_pathogenic_non_coding_subset.csv" \
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if subset else "variant_effect_pathogenic/vep_pathogenic_non_coding.csv"
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