| { | |
| "_name_or_path": "bioformers/bioformer-8L", | |
| "architectures": [ | |
| "BertForTokenClassification" | |
| ], | |
| "attention_probs_dropout_prob": 0.1, | |
| "classifier_dropout": null, | |
| "hidden_act": "gelu", | |
| "hidden_dropout_prob": 0.1, | |
| "hidden_size": 512, | |
| "id2label": { | |
| "0": "O", | |
| "1": "B-chemical", | |
| "2": "B-species", | |
| "3": "B-gene", | |
| "4": "I-gene", | |
| "5": "B-taxonomy_domain", | |
| "6": "I-chemical", | |
| "7": "B-protein_type", | |
| "8": "B-experimental_method", | |
| "9": "I-experimental_method", | |
| "10": "I-protein_type", | |
| "11": "I-species", | |
| "12": "B-evidence", | |
| "13": "I-evidence", | |
| "14": "B-protein", | |
| "15": "I-protein", | |
| "16": "B-protein_state", | |
| "17": "B-site", | |
| "18": "I-site", | |
| "19": "B-structure_element", | |
| "20": "I-structure_element", | |
| "21": "B-complex_assembly", | |
| "22": "I-protein_state", | |
| "23": "I-complex_assembly", | |
| "24": "B-ptm", | |
| "25": "B-mutant", | |
| "26": "I-mutant", | |
| "27": "B-oligomeric_state", | |
| "28": "B-residue_name_number", | |
| "29": "B-bond_interaction", | |
| "30": "I-bond_interaction", | |
| "31": "B-residue_range", | |
| "32": "I-residue_range", | |
| "33": "B-residue_name", | |
| "34": "B-residue_number", | |
| "35": "I-ptm", | |
| "36": "I-taxonomy_domain", | |
| "37": "I-oligomeric_state", | |
| "38": "I-residue_name_number", | |
| "39": "I-residue_name", | |
| "40": "I-residue_number" | |
| }, | |
| "initializer_range": 0.02, | |
| "intermediate_size": 2048, | |
| "label2id": { | |
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| "B-chemical": 1, | |
| "B-complex_assembly": 21, | |
| "B-evidence": 12, | |
| "B-experimental_method": 8, | |
| "B-gene": 3, | |
| "B-mutant": 25, | |
| "B-oligomeric_state": 27, | |
| "B-protein": 14, | |
| "B-protein_state": 16, | |
| "B-protein_type": 7, | |
| "B-ptm": 24, | |
| "B-residue_name": 33, | |
| "B-residue_name_number": 28, | |
| "B-residue_number": 34, | |
| "B-residue_range": 31, | |
| "B-site": 17, | |
| "B-species": 2, | |
| "B-structure_element": 19, | |
| "B-taxonomy_domain": 5, | |
| "I-bond_interaction": 30, | |
| "I-chemical": 6, | |
| "I-complex_assembly": 23, | |
| "I-evidence": 13, | |
| "I-experimental_method": 9, | |
| "I-gene": 4, | |
| "I-mutant": 26, | |
| "I-oligomeric_state": 37, | |
| "I-protein": 15, | |
| "I-protein_state": 22, | |
| "I-protein_type": 10, | |
| "I-ptm": 35, | |
| "I-residue_name": 39, | |
| "I-residue_name_number": 38, | |
| "I-residue_number": 40, | |
| "I-residue_range": 32, | |
| "I-site": 18, | |
| "I-species": 11, | |
| "I-structure_element": 20, | |
| "I-taxonomy_domain": 36, | |
| "O": 0 | |
| }, | |
| "layer_norm_eps": 1e-12, | |
| "max_position_embeddings": 512, | |
| "model_type": "bert", | |
| "num_attention_heads": 8, | |
| "num_hidden_layers": 8, | |
| "pad_token_id": 0, | |
| "position_embedding_type": "absolute", | |
| "torch_dtype": "float32", | |
| "transformers_version": "4.28.0", | |
| "type_vocab_size": 2, | |
| "use_cache": true, | |
| "vocab_size": 32768 | |
| } | |